.. NGS-R-Bootcamp documentation master file, created by
   sphinx-quickstart on Tue Jul 21 12:16:06 2015.
   You can adapt this file completely to your liking, but it should at least
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Duke NGS Course (Summer 2015)
==========================================

.. toctree::
   :maxdepth: 2
   
   readings
   lectures
   VMsAtDuke 
   Installation
   ..
      InstallPackages 

   BasicRinJupyterAndRstudio
   IntroductionToR 
   PreparingDataForAnalysis 
   WorkingWithData 
   GroupingandAggregation
   Hypothesistestingandpowercalcuations 
   Probabilitydistributionsandrandomnumbergeneration 
   WritingcustomfunctionsinRSolutions 
   FunctionalProgramming 
   RFormulasAndStatisticalModeling 
   SupervisedLearning
   ..
      SupervisedLearningWhatCouldGoWrong
   UnsupervisedLearning
   UnsupervisedLearningAndNGS
   MultipleTesting 
   CountModels 
   LogisticRegression 
   BaseGraphics
   ..
      MiscGraphics 
   BaseGraphicsGGPlotComparison
   ..
      GGPlot2Graphics
   PracticeONESolutios
   ..
      PracticeTWOSolutions
      PracticeTHREESolutions 
      PracticeFOURSolutions
   DESeq2Notebook
   ..
      DESeq2NotebookFromMatrix 
    

Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`